1 1. Map
2 2. BAM-BAI reference file
3 3. Selectable plot
4 4. PDB file - 3D protein visualization
5 5. IPYNB - Jupiter file visualization
6 6. Taxonomic abundance and read classes visualization
7 7. Group result visualization
8 8. Data files (CSV, TSV) file preview
9 9. JPG, GIF
10 10. Markdown
11 11. Highchart
12 12. BiotiaDX visualization
- 12.1 Project level - Heatmap
- 12.2 Sample level
13 13. FASTQ file

1. Map

Base layer

Temperature layer

Colored samples by metadata

Animated datalayer

Further map visualization examples: https://portal.geoseeq.com/sample-groups/78319a7c-c393-41a8-83d4-6a02eef498b4

2. BAM-BAI reference file

The bam alignment visualization requires 3 files to display the chart. Besides the .bam file you need to upload the .bai index file and a .2bit reference files to the same folder and these files should be named in a specific way.

3. Selectable plot

4. PDB file - 3D protein visualization

5. IPYNB - Jupiter file visualization

6. Taxonomic abundance and read classes visualization

7. Group result visualization

MDS (Multi-Dimensional Scaling) or two-dimensional PCA

Stacked bar chart

8. Data files (CSV, TSV) file preview

9. JPG, GIF

10. Markdown

11. Highchart

12. BiotiaDX visualization

BIOTIA-DX Analysis

GeoSeeq Public User Documentation

Visualizations