Visualizations

 

1. Map

 

 

image-20240411-122613.png
Base layer

 

image-20240411-122721.png
Temperature layer

 

 

 

Further map visualization examples: https://portal.geoseeq.com/sample-groups/78319a7c-c393-41a8-83d4-6a02eef498b4

2. BAM-BAI reference file

 

The bam alignment visualization requires 3 files to display the chart. Besides the .bam file you need to upload the .bai index file and a .2bit reference files to the same folder and these files should be named in a specific way.

 

 

3. Selectable plot

 

 

 

 

4. PDB file - 3D protein visualization

 

 

5. IPYNB - Jupiter file visualization

 

 

6. Taxonomic abundance and read classes visualization

 

 

7. Group result visualization

 

MDS (Multi-Dimensional Scaling) or two-dimensional PCA

 

Stacked bar chart

 

8. Data files (CSV, TSV) file preview

 

 

 

9. JPG, GIF

 

 

10. Markdown

 

 

11. Highchart

 

 

 

12. BiotiaDX visualization

 

https://biotia.atlassian.net/wiki/spaces/GPUD/pages/163119135

Project level - Heatmap

 

 

Sample level

 

13. FASTQ file