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Visualizations
Visualizations
- 1 1. Map
- 2 2. BAM-BAI reference file
- 3 3. Selectable plot
- 4 4. PDB file - 3D protein visualization
- 5 5. IPYNB - Jupiter file visualization
- 6 6. Taxonomic abundance and read classes visualization
- 7 7. Group result visualization
- 8 8. Data files (CSV, TSV) file preview
- 9 9. JPG, GIF
- 10 10. Markdown
- 11 11. Highchart
- 12 12. BiotiaDX visualization
- 12.1 Project level - Heatmap
- 12.2 Sample level
- 13 13. FASTQ file
1. Map
Base layer
Temperature layer
Further map visualization examples: https://portal.geoseeq.com/sample-groups/78319a7c-c393-41a8-83d4-6a02eef498b4
2. BAM-BAI reference file
The bam alignment visualization requires 3 files to display the chart. Besides the .bam file you need to upload the .bai index file and a .2bit reference files to the same folder and these files should be named in a specific way.
3. Selectable plot
4. PDB file - 3D protein visualization
5. IPYNB - Jupiter file visualization
6. Taxonomic abundance and read classes visualization
7. Group result visualization
MDS (Multi-Dimensional Scaling) or two-dimensional PCA
Stacked bar chart
8. Data files (CSV, TSV) file preview
9. JPG, GIF
10. Markdown
11. Highchart
12. BiotiaDX visualization
Project level - Heatmap
Sample level
13. FASTQ file