• General process

• Data/File hierarchy

• Visualizations

  • Project level

    • Taxons

    • Statistics

  • Sample level

    • Table view

    • Alignments view

General process

1. step: User uploads their samples (FASTQ files) to the GeoSeeq platform​

2. step: User starts (manual) a BiotiaDX app run (analysis) for their samples on the GeoSeeq platform​

3. step: BiotiaDX process the FASTQ files from GeoSeeq and generate Biotia DX result reports

4. step: GeoSeeq presents the BiotiaDX analysis results

Data/File hierarchy

Visualizations

There are two levels of the visualization:

• Project level

• Sample level

Project level

Project level visualization file is located in the sample’s project folder. (The project folder’s name should start with “biotia-dx”. )

Project-level visualization has two views: taxons and statistics. For the visualization, the user should start a file preview for the JSON file.

Open

Taxons

Open

Statistics

Sample level

For the visualization, the user should start a file preview for the JSON file.

Table view

Alignments view